HL_6YAM_032

3D structure

PDB id

6YAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

6YAM|1|2|U|1367

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YAM_032 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.1464

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6YAM|1|2|G|1362
6YAM|1|2|U|1363
6YAM|1|2|U|1364
6YAM|1|2|A|1365
6YAM|1|2|A|1366
6YAM|1|2|U|1367
6YAM|1|2|U|1368
6YAM|1|2|C|1369

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein uS3

Chain T

40S ribosomal protein eS17