HL_6YDP_008

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCACCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDP_008 not in the Motif Atlas

Geometric match to HL_1G1X_003

Geometric discrepancy: 0.2885

The information below is about HL_1G1X_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6YDP|1|AA|C|248
6YDP|1|AA|C|249
6YDP|1|AA|A|250
6YDP|1|AA|C|251
6YDP|1|AA|C|252
6YDP|1|AA|G|253

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AL

Mitochondrial ribosomal protein S12

Chain Ap

28S ribosomal protein S18b, mitochondrial