HL_6YDP_009

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGUAAAAAG

Length

10 nucleotides

Bulged bases

6YDP|1|AA|U|345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDP_009 not in the Motif Atlas

Geometric match to HL_5J7L_015

Geometric discrepancy: 0.198

The information below is about HL_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6YDP|1|AA|C|342
6YDP|1|AA|U|343
6YDP|1|AA|G|344
6YDP|1|AA|U|345
6YDP|1|AA|A|346
6YDP|1|AA|A|347
6YDP|1|AA|A|348
6YDP|1|AA|A|349
6YDP|1|AA|A|350
6YDP|1|AA|G|351

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AG

Mitochondrial ribosomal protein S7

Chain AK

uS11m

Chain AU

bS21m

Chain AX

mRNA