HL_6YDP_010

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDP_010 not in the Motif Atlas

Geometric match to HL_1G1X_005

Geometric discrepancy: 0.1261

The information below is about HL_1G1X_005

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6YDP|1|AA|C|376
6YDP|1|AA|G|377
6YDP|1|AA|A|378
6YDP|1|AA|A|379
6YDP|1|AA|A|380
6YDP|1|AA|G|381

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AO

uS15m

Chain AU

bS21m

Chain Am

mS37