HL_6YDP_015

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCCAAUUC

Length

8 nucleotides

Bulged bases

6YDP|1|AA|C|599, 6YDP|1|AA|U|604

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDP_015 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.399

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6YDP|1|AA|G|598
6YDP|1|AA|C|599
6YDP|1|AA|C|600
6YDP|1|AA|A|601
6YDP|1|AA|A|602
6YDP|1|AA|U|603
6YDP|1|AA|U|604
6YDP|1|AA|C|605

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AE

Mitochondrial ribosomal protein S5

Chain AN

Mitochondrial ribosomal protein S14

Chain Ai

mS33

Chain Ao

Pentatricopeptide repeat domain 3