HL_6YDP_017
3D structure
- PDB id
- 6YDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UAGCACA
- Length
- 7 nucleotides
- Bulged bases
- 6YDP|1|AA|A|665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YDP_017 not in the Motif Atlas
- Geometric match to HL_4GXY_003
- Geometric discrepancy: 0.1764
- The information below is about HL_4GXY_003
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_97725.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6YDP|1|AA|U|664
6YDP|1|AA|A|665
6YDP|1|AA|G|666
6YDP|1|AA|C|667
6YDP|1|AA|A|668
6YDP|1|AA|C|669
6YDP|1|AA|A|670
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AC
- Mitochondrial ribosomal protein S24
- Chain AG
- Mitochondrial ribosomal protein S7
- Chain AI
- uS9m
- Chain AJ
- Mitochondrial ribosomal protein S10
- Chain AN
- Mitochondrial ribosomal protein S14
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