HL_6YDP_019

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUGAAACU

Length

8 nucleotides

Bulged bases

6YDP|1|AA|C|766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDP_019 not in the Motif Atlas

Geometric match to HL_4V9F_010

Geometric discrepancy: 0.2314

The information below is about HL_4V9F_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6YDP|1|AA|A|760
6YDP|1|AA|U|761
6YDP|1|AA|G|762
6YDP|1|AA|A|763
6YDP|1|AA|A|764
6YDP|1|AA|A|765
6YDP|1|AA|C|766
6YDP|1|AA|U|767

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AN

Mitochondrial ribosomal protein S14

Chain Ai

mS33