HL_6YDP_021

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAACCUAUA

Length

9 nucleotides

Bulged bases

6YDP|1|AA|C|883, 6YDP|1|AA|C|884, 6YDP|1|AA|U|885

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDP_021 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.383

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

6YDP|1|AA|U|880
6YDP|1|AA|A|881
6YDP|1|AA|A|882
6YDP|1|AA|C|883
6YDP|1|AA|C|884
6YDP|1|AA|U|885
6YDP|1|AA|A|886
6YDP|1|AA|U|887
6YDP|1|AA|A|888

Current chains

Chain AA

12S rRNA

Nearby chains

Chain Ae

Mitochondrial ribosomal protein S27

Chain Aj

mS34