HL_6YDP_029
3D structure
- PDB id
- 6YDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAUUACCCC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YDP_029 not in the Motif Atlas
- Geometric match to HL_8C3A_039
- Geometric discrepancy: 0.335
- The information below is about HL_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
6YDP|1|BA|G|167
6YDP|1|BA|A|168
6YDP|1|BA|U|169
6YDP|1|BA|U|170
6YDP|1|BA|A|171
6YDP|1|BA|C|172
6YDP|1|BA|C|173
6YDP|1|BA|C|174
6YDP|1|BA|C|175
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain BN
- uL13m
- Chain BU
- Mitochondrial ribosomal protein L20
- Chain BV
- Mitochondrial ribosomal protein L21
- Chain BW
- uL22m
- Chain Bf
- mL42
- Chain Bg
- Mitochondrial ribosomal protein L43
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