HL_6YDP_032

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUAAAAGAA

Length

10 nucleotides

Bulged bases

6YDP|1|BA|A|272, 6YDP|1|BA|A|274, 6YDP|1|BA|G|276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDP_032 not in the Motif Atlas

Geometric match to HL_4WF9_041

Geometric discrepancy: 0.3062

The information below is about HL_4WF9_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_65167.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6YDP|1|BA|U|269
6YDP|1|BA|U|270
6YDP|1|BA|U|271
6YDP|1|BA|A|272
6YDP|1|BA|A|273
6YDP|1|BA|A|274
6YDP|1|BA|A|275
6YDP|1|BA|G|276
6YDP|1|BA|A|277
6YDP|1|BA|A|278

Current chains

Chain BA

12S rRNA

Nearby chains

Chain An

Aurora kinase A interacting protein 1

Chain BD

uL2m

Chain Ba

Mitochondrial ribosomal protein L37