HL_6YDP_034

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

6YDP|1|BA|A|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDP_034 not in the Motif Atlas

Geometric match to HL_4V9F_025

Geometric discrepancy: 0.2397

The information below is about HL_4V9F_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

6YDP|1|BA|U|326
6YDP|1|BA|G|327
6YDP|1|BA|A|328
6YDP|1|BA|A|329
6YDP|1|BA|A|330
6YDP|1|BA|A|331
6YDP|1|BA|G|332

Current chains

Chain BA

12S rRNA

Nearby chains

Chain BD

uL2m

Chain Bi

Mitochondrial ribosomal protein L45