HL_6YDP_037

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUACAGC

Length

8 nucleotides

Bulged bases

6YDP|1|BA|A|445, 6YDP|1|BA|G|448

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDP_037 not in the Motif Atlas

Geometric match to HL_4WF9_027

Geometric discrepancy: 0.1492

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6YDP|1|BA|G|442
6YDP|1|BA|G|443
6YDP|1|BA|U|444
6YDP|1|BA|A|445
6YDP|1|BA|C|446
6YDP|1|BA|A|447
6YDP|1|BA|G|448
6YDP|1|BA|C|449

Current chains

Chain BA

12S rRNA

Nearby chains

Chain BJ

Mitochondrial ribosomal protein L10

Chain BQ

uL16m

Chain Bt

Mitochondrial ribosomal protein L57