HL_6YDP_039

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUAAAAGCAG

Length

11 nucleotides

Bulged bases

6YDP|1|BA|A|515

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDP_039 not in the Motif Atlas

Geometric match to HL_1MMS_001

Geometric discrepancy: 0.2632

The information below is about HL_1MMS_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6YDP|1|BA|C|509
6YDP|1|BA|C|510
6YDP|1|BA|U|511
6YDP|1|BA|A|512
6YDP|1|BA|A|513
6YDP|1|BA|A|514
6YDP|1|BA|A|515
6YDP|1|BA|G|516
6YDP|1|BA|C|517
6YDP|1|BA|A|518
6YDP|1|BA|G|519

Current chains

Chain BA

12S rRNA

Nearby chains

Chain BC

Elongation factor G, mitochondrial

Chain BK

Mitochondrial ribosomal protein L11

Chain Bq

mL54