HL_6YDP_043

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAUAAU

Length

6 nucleotides

Bulged bases

6YDP|1|BA|A|689

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDP_043 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2507

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6YDP|1|BA|A|688
6YDP|1|BA|A|689
6YDP|1|BA|U|690
6YDP|1|BA|A|691
6YDP|1|BA|A|692
6YDP|1|BA|U|693

Current chains

Chain BA

12S rRNA

Nearby chains

Chain BR

Uncharacterized protein

Chain BW

uL22m

Chain Bi

Mitochondrial ribosomal protein L45