HL_6YDP_046
3D structure
- PDB id
- 6YDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUUACCAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 6YDP|1|BA|A|832, 6YDP|1|BA|C|833, 6YDP|1|BA|C|834, 6YDP|1|BA|A|838
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YDP_046 not in the Motif Atlas
- Geometric match to HL_5J7L_178
- Geometric discrepancy: 0.1075
- The information below is about HL_5J7L_178
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01962.2
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
6YDP|1|BA|U|829
6YDP|1|BA|U|830
6YDP|1|BA|U|831
6YDP|1|BA|A|832
6YDP|1|BA|C|833
6YDP|1|BA|C|834
6YDP|1|BA|A|835
6YDP|1|BA|A|836
6YDP|1|BA|A|837
6YDP|1|BA|A|838
6YDP|1|BA|A|839
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain B7
- Mitochondrial ribosomal protein L34
- Chain BD
- uL2m
- Chain BW
- uL22m
- Chain Bi
- Mitochondrial ribosomal protein L45
Coloring options: