HL_6YDP_050

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCCAAAUAA

Length

9 nucleotides

Bulged bases

6YDP|1|BA|U|950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDP_050 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1398

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6YDP|1|BA|U|944
6YDP|1|BA|C|945
6YDP|1|BA|C|946
6YDP|1|BA|A|947
6YDP|1|BA|A|948
6YDP|1|BA|A|949
6YDP|1|BA|U|950
6YDP|1|BA|A|951
6YDP|1|BA|A|952

Current chains

Chain BA

12S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BO

uL14m