HL_6YDP_054

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUA

Length

4 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDP_054 not in the Motif Atlas

Geometric match to HL_5J7L_176

Geometric discrepancy: 0.2156

The information below is about HL_5J7L_176

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.4

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

6YDP|1|BA|U|1187
6YDP|1|BA|U|1188
6YDP|1|BA|U|1189
6YDP|1|BA|A|1190

Current chains

Chain BA

12S rRNA

Nearby chains

Chain B6

bL33m

Chain B8

Mitochondrial ribosomal protein L35

Chain Bv

mL64