HL_6YDP_057

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGUUCCUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDP_057 not in the Motif Atlas

Geometric match to HL_4V9F_062

Geometric discrepancy: 0.1777

The information below is about HL_4V9F_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6YDP|1|BA|A|1294
6YDP|1|BA|G|1295
6YDP|1|BA|U|1296
6YDP|1|BA|U|1297
6YDP|1|BA|C|1298
6YDP|1|BA|C|1299
6YDP|1|BA|U|1300
6YDP|1|BA|A|1301
6YDP|1|BA|U|1302

Current chains

Chain BA

12S rRNA

Nearby chains

Chain B9

Ribosomal protein

Chain BC

Elongation factor G, mitochondrial

Chain BQ

uL16m

Chain Bq

mL54