HL_6YDP_058

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGCAACCG

Length

8 nucleotides

Bulged bases

6YDP|1|BA|G|1352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDP_058 not in the Motif Atlas

Geometric match to HL_5J7L_194

Geometric discrepancy: 0.1384

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

6YDP|1|BA|U|1351
6YDP|1|BA|G|1352
6YDP|1|BA|C|1353
6YDP|1|BA|A|1354
6YDP|1|BA|A|1355
6YDP|1|BA|C|1356
6YDP|1|BA|C|1357
6YDP|1|BA|G|1358

Current chains

Chain BA

12S rRNA

Nearby chains

Chain B9

Ribosomal protein

Chain BC

Elongation factor G, mitochondrial