HL_6YDP_065

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUAAUCAAA

Length

9 nucleotides

Bulged bases

6YDP|1|BB|U|20, 6YDP|1|BB|C|21, 6YDP|1|BB|A|22, 6YDP|1|BB|A|23

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDP_065 not in the Motif Atlas

Homologous match to HL_5B63_003

Geometric discrepancy: 0.1916

The information below is about HL_5B63_003

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

6YDP|1|BB|U|12
6YDP|1|BB|U|13
6YDP|1|BB|A|14
6YDP|1|BB|A|15
6YDP|1|BB|U|20
6YDP|1|BB|C|21
6YDP|1|BB|A|22
6YDP|1|BB|A|23
6YDP|1|BB|A|24

Current chains

Chain BB

CP tRNAPhe

Nearby chains

Chain BS

Mitochondrial ribosomal protein L18

Chain Bb

Mitochondrial ribosomal protein L38

Chain Bo

mL52