HL_6YDP_069

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCCU

Length

4 nucleotides

Bulged bases

6YDP|1|BA|C|655

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDP_069 not in the Motif Atlas

Geometric match to HL_2UWM_002

Geometric discrepancy: 0.3359

The information below is about HL_2UWM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.6

Basepair signature

cWW-F

Number of instances in this motif group

11

Unit IDs

6YDP|1|BA|G|654
6YDP|1|BA|C|655
6YDP|1|BA|C|656
6YDP|1|BA|U|657

Current chains

Chain BA

12S rRNA

Nearby chains

Chain B5

bL32m

Chain BR

Uncharacterized protein

Chain Bw

39S ribosomal protein S30, mitochondrial