HL_6YDW_020
3D structure
- PDB id
- 6YDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GAAUAGAGUGC
- Length
- 11 nucleotides
- Bulged bases
- 6YDW|1|AA|U|803, 6YDW|1|AA|U|808
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YDW_020 not in the Motif Atlas
- Homologous match to HL_5J7L_029
- Geometric discrepancy: 0.4425
- The information below is about HL_5J7L_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6YDW|1|AA|G|800
6YDW|1|AA|A|801
6YDW|1|AA|A|802
6YDW|1|AA|U|803
6YDW|1|AA|A|804
6YDW|1|AA|G|805
6YDW|1|AA|A|806
6YDW|1|AA|G|807
6YDW|1|AA|U|808
6YDW|1|AA|G|809
6YDW|1|AA|C|810
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AI
- Uncharacterized protein
- Chain AJ
- Mitochondrial ribosomal protein S10
- Chain AN
- Mitochondrial ribosomal protein S14
- Chain Ai
- mS33
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