HL_6YDW_049
3D structure
- PDB id
- 6YDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UUUACCAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 6YDW|1|BA|A|832, 6YDW|1|BA|C|833, 6YDW|1|BA|C|834, 6YDW|1|BA|A|838
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YDW_049 not in the Motif Atlas
- Geometric match to HL_5TBW_046
- Geometric discrepancy: 0.164
- The information below is about HL_5TBW_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.6
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
6YDW|1|BA|U|829
6YDW|1|BA|U|830
6YDW|1|BA|U|831
6YDW|1|BA|A|832
6YDW|1|BA|C|833
6YDW|1|BA|C|834
6YDW|1|BA|A|835
6YDW|1|BA|A|836
6YDW|1|BA|A|837
6YDW|1|BA|A|838
6YDW|1|BA|A|839
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain B7
- Mitochondrial ribosomal protein L34
- Chain BD
- Uncharacterized protein
- Chain BW
- Uncharacterized protein
- Chain Bi
- Mitochondrial ribosomal protein L45
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