HL_6YEF_005

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGAAUACAUAGC

Length

13 nucleotides

Bulged bases

6YEF|1|A|U|163, 6YEF|1|A|A|164

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YEF_005 not in the Motif Atlas

Geometric match to HL_8H0S_002

Geometric discrepancy: 0.3991

The information below is about HL_8H0S_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6YEF|1|A|G|158
6YEF|1|A|U|159
6YEF|1|A|G|160
6YEF|1|A|A|161
6YEF|1|A|A|162
6YEF|1|A|U|163
6YEF|1|A|A|164
6YEF|1|A|C|165
6YEF|1|A|A|166
6YEF|1|A|U|167
6YEF|1|A|A|168
6YEF|1|A|G|169
6YEF|1|A|C|170

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L28