HL_6YEF_043

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUAUCAAAAA

Length

11 nucleotides

Bulged bases

6YEF|1|A|A|1807, 6YEF|1|A|U|1808, 6YEF|1|A|C|1809, 6YEF|1|A|A|1813

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YEF_043 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.0998

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6YEF|1|A|U|1804
6YEF|1|A|U|1805
6YEF|1|A|U|1806
6YEF|1|A|A|1807
6YEF|1|A|U|1808
6YEF|1|A|C|1809
6YEF|1|A|A|1810
6YEF|1|A|A|1811
6YEF|1|A|A|1812
6YEF|1|A|A|1813
6YEF|1|A|A|1814

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain D

50S ribosomal protein L2