HL_6YEF_090
3D structure
- PDB id
- 6YEF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAAGCAACGC
- Length
- 10 nucleotides
- Bulged bases
- 6YEF|1|a|G|980
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YEF_090 not in the Motif Atlas
- Homologous match to HL_4LFB_021
- Geometric discrepancy: 0.1146
- The information below is about HL_4LFB_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6YEF|1|a|G|972
6YEF|1|a|A|973
6YEF|1|a|A|974
6YEF|1|a|G|975
6YEF|1|a|C|976
6YEF|1|a|A|977
6YEF|1|a|A|978
6YEF|1|a|C|979
6YEF|1|a|G|980
6YEF|1|a|C|981
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain i
- 30S ribosomal protein S9
- Chain j
- ribosomal protein uS10
- Chain m
- 30S ribosomal protein S13
- Chain x
- Transfer RNA; tRNA
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