HL_6YLG_028
3D structure
- PDB id
- 6YLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGUAACAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YLG_028 not in the Motif Atlas
- Homologous match to HL_8C3A_028
- Geometric discrepancy: 0.182
- The information below is about HL_8C3A_028
- Detailed Annotation
- GNRA wlth tandem sheared
- Broad Annotation
- No text annotation
- Motif group
- HL_27115.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
6YLG|1|1|U|1267
6YLG|1|1|G|1268
6YLG|1|1|U|1269
6YLG|1|1|A|1270
6YLG|1|1|A|1271
6YLG|1|1|C|1272
6YLG|1|1|A|1273
6YLG|1|1|A|1274
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain W
- Ribosome assembly factor MRT4
- Chain b
- Nucleolar GTP-binding protein 1
- Chain m
- Nucleolar GTP-binding protein 2
- Chain r
- Ribosome biogenesis protein NSA2
Coloring options: