HL_6YLG_070
3D structure
- PDB id
- 6YLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGAAUUGCAGAAUGUGAA
- Length
- 18 nucleotides
- Bulged bases
- 6YLG|1|2|U|86
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YLG_070 not in the Motif Atlas
- Homologous match to HL_9AXU_072
- Geometric discrepancy: 0.4114
- The information below is about HL_9AXU_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68571.2
- Basepair signature
- cWW-tSH-tHS-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6YLG|1|2|U|69
6YLG|1|2|G|70
6YLG|1|2|A|71
6YLG|1|2|A|72
6YLG|1|2|U|73
6YLG|1|2|U|74
6YLG|1|2|G|75
6YLG|1|2|C|76
6YLG|1|2|A|77
6YLG|1|2|G|78
6YLG|1|2|A|79
6YLG|1|2|A|80
6YLG|1|2|U|81
6YLG|1|2|G|85
6YLG|1|2|U|86
6YLG|1|2|G|87
6YLG|1|2|A|88
6YLG|1|2|A|89
Current chains
- Chain 2
- 5.8S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 4
- Probable metalloprotease ARX1
- Chain Y
- 60S ribosomal protein L26-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
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