HL_6YLX_020
3D structure
- PDB id
- 6YLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-60S State NE1 (TAP-Flag-Nop53)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 6YLX|1|1|G|878, 6YLX|1|1|U|879, 6YLX|1|1|A|883
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YLX_020 not in the Motif Atlas
- Homologous match to HL_8C3A_020
- Geometric discrepancy: 0.3151
- The information below is about HL_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
6YLX|1|1|A|876
6YLX|1|1|C|877
6YLX|1|1|G|878
6YLX|1|1|U|879
6YLX|1|1|G|880
6YLX|1|1|C|881
6YLX|1|1|A|882
6YLX|1|1|A|883
6YLX|1|1|A|884
6YLX|1|1|U|885
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain P
- 60S ribosomal protein L17-A
- Chain j
- 60S ribosomal protein L37-A
- Chain w
- 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase
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