HL_6YLX_021

3D structure

PDB id

6YLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE1 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

6YLX|1|1|A|913, 6YLX|1|1|G|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YLX_021 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.2611

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6YLX|1|1|G|910
6YLX|1|1|C|911
6YLX|1|1|G|912
6YLX|1|1|A|913
6YLX|1|1|A|914
6YLX|1|1|A|915
6YLX|1|1|G|916
6YLX|1|1|A|917
6YLX|1|1|C|918

Current chains

Chain 1

25S rRNA

Nearby chains

Chain j

60S ribosomal protein L37-A

Chain w

27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase