HL_6YLX_028

3D structure

PDB id

6YLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE1 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YLX_028 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.4044

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6YLX|1|1|U|1267
6YLX|1|1|G|1268
6YLX|1|1|U|1269
6YLX|1|1|A|1270
6YLX|1|1|A|1271
6YLX|1|1|C|1272
6YLX|1|1|A|1273
6YLX|1|1|A|1274

Current chains

Chain 1

25S rRNA

Nearby chains

Chain W

Ribosome assembly factor MRT4

Chain b

Nucleolar GTP-binding protein 1

Chain r

Ribosome biogenesis protein NSA2