HL_6YLY_022

3D structure

PDB id

6YLY (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE2 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

6YLY|1|1|C|959, 6YLY|1|1|U|960, 6YLY|1|1|A|962

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YLY_022 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.1602

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6YLY|1|1|C|958
6YLY|1|1|C|959
6YLY|1|1|U|960
6YLY|1|1|C|961
6YLY|1|1|A|962
6YLY|1|1|G|963

Current chains

Chain 1

25S rRNA

Nearby chains