HL_6YLY_027
3D structure
- PDB id
- 6YLY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-60S State NE2 (TAP-Flag-Nop53)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CCAUGGAAGUCGG
- Length
- 13 nucleotides
- Bulged bases
- 6YLY|1|1|A|1245
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YLY_027 not in the Motif Atlas
- Geometric match to HL_3WQY_001
- Geometric discrepancy: 0.388
- The information below is about HL_3WQY_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- tRNA D-loop
- Motif group
- HL_57684.1
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6YLY|1|1|C|1238
6YLY|1|1|C|1239
6YLY|1|1|A|1240
6YLY|1|1|U|1241
6YLY|1|1|G|1242
6YLY|1|1|G|1243
6YLY|1|1|A|1244
6YLY|1|1|A|1245
6YLY|1|1|G|1246
6YLY|1|1|U|1247
6YLY|1|1|C|1248
6YLY|1|1|G|1249
6YLY|1|1|G|1250
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain b
- Nucleolar GTP-binding protein 1
Coloring options: