HL_6YLY_047

3D structure

PDB id

6YLY (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE2 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCAGAAAGUGA

Length

11 nucleotides

Bulged bases

6YLY|1|1|G|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YLY_047 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.2463

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

6YLY|1|1|U|2162
6YLY|1|1|C|2163
6YLY|1|1|A|2164
6YLY|1|1|G|2165
6YLY|1|1|A|2166
6YLY|1|1|A|2167
6YLY|1|1|A|2168
6YLY|1|1|G|2169
6YLY|1|1|U|2170
6YLY|1|1|G|2171
6YLY|1|1|A|2172

Current chains

Chain 1

25S rRNA

Nearby chains

Chain G

60S ribosomal protein L8-A

Chain N

60S ribosomal protein L15-A