HL_6YLY_048

3D structure

PDB id

6YLY (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE2 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGGC

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YLY_048 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.3049

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6YLY|1|1|G|2369
6YLY|1|1|G|2370
6YLY|1|1|G|2376
6YLY|1|1|G|2377
6YLY|1|1|C|2378

Current chains

Chain 1

25S rRNA

Nearby chains

Chain e

60S ribosomal protein L32

Chain f

60S ribosomal protein L33-A

Chain s

Nuclear GTP-binding protein NUG1