HL_6YLY_052

3D structure

PDB id

6YLY (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE2 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGAAUUUG

Length

9 nucleotides

Bulged bases

6YLY|1|1|G|2777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YLY_052 not in the Motif Atlas

Homologous match to HL_5TBW_060

Geometric discrepancy: 0.1151

The information below is about HL_5TBW_060

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

6YLY|1|1|C|2776
6YLY|1|1|G|2777
6YLY|1|1|G|2778
6YLY|1|1|A|2779
6YLY|1|1|A|2780
6YLY|1|1|U|2781
6YLY|1|1|U|2782
6YLY|1|1|U|2783
6YLY|1|1|G|2784

Current chains

Chain 1

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L13-A

Chain a

60S ribosomal protein L28

Chain i

60S ribosomal protein L36-A