HL_6YLY_064
3D structure
- PDB id
- 6YLY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-60S State NE2 (TAP-Flag-Nop53)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUGAAUUGCAGAAUUCCGUGAAUC
- Length
- 24 nucleotides
- Bulged bases
- 6YLY|1|3|C|84, 6YLY|1|3|U|86, 6YLY|1|3|U|90
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YLY_064 not in the Motif Atlas
- Homologous match to HL_8C3A_075
- Geometric discrepancy: 0.3394
- The information below is about HL_8C3A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07882.1
- Basepair signature
- cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6YLY|1|3|G|68
6YLY|1|3|U|69
6YLY|1|3|G|70
6YLY|1|3|A|71
6YLY|1|3|A|72
6YLY|1|3|U|73
6YLY|1|3|U|74
6YLY|1|3|G|75
6YLY|1|3|C|76
6YLY|1|3|A|77
6YLY|1|3|G|78
6YLY|1|3|A|79
6YLY|1|3|A|80
6YLY|1|3|U|81
6YLY|1|3|U|82
6YLY|1|3|C|83
6YLY|1|3|C|84
6YLY|1|3|G|85
6YLY|1|3|U|86
6YLY|1|3|G|87
6YLY|1|3|A|88
6YLY|1|3|A|89
6YLY|1|3|U|90
6YLY|1|3|C|91
Current chains
- Chain 3
- 5.8S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain Y
- 60S ribosomal protein L26-A
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
Coloring options: