HL_6YPU_009

3D structure

PDB id

6YPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUAUG

Length

6 nucleotides

Bulged bases

6YPU|1|2|U|417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YPU_009 not in the Motif Atlas

Homologous match to HL_4LFB_011

Geometric discrepancy: 0.5223

The information below is about HL_4LFB_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

6YPU|1|2|C|415
6YPU|1|2|U|416
6YPU|1|2|U|417
6YPU|1|2|A|418
6YPU|1|2|U|419
6YPU|1|2|G|420

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain e

30S ribosomal protein S4