HL_6YS3_061
3D structure
- PDB id
- 6YS3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- AGUUCAUAU
- Length
- 9 nucleotides
- Bulged bases
- 6YS3|1|b|U|2477
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YS3_061 not in the Motif Atlas
- Homologous match to HL_7A0S_059
- Geometric discrepancy: 0.2692
- The information below is about HL_7A0S_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_52011.1
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
6YS3|1|b|A|2475
6YS3|1|b|G|2476
6YS3|1|b|U|2477
6YS3|1|b|U|2478
6YS3|1|b|C|2479
6YS3|1|b|A|2480
6YS3|1|b|U|2481
6YS3|1|b|A|2482
6YS3|1|b|U|2483
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 8
- 50S ribosomal protein L36
- Chain g
- 50S ribosomal protein L6
- Chain m
- 50S ribosomal protein L16
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