HL_6YSI_012
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GCACGUGAAAC
- Length
- 11 nucleotides
- Bulged bases
- 6YSI|1|1|G|378, 6YSI|1|1|A|381
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YSI_012 not in the Motif Atlas
- Homologous match to HL_5J7L_145
- Geometric discrepancy: 0.1534
- The information below is about HL_5J7L_145
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_91503.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6YSI|1|1|G|374
6YSI|1|1|C|375
6YSI|1|1|A|376
6YSI|1|1|C|377
6YSI|1|1|G|378
6YSI|1|1|U|379
6YSI|1|1|G|380
6YSI|1|1|A|381
6YSI|1|1|A|382
6YSI|1|1|A|383
6YSI|1|1|C|384
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 8
- Transfer RNA; tRNA
- Chain T
- 50S ribosomal protein L28
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