HL_6YSR_095

3D structure

PDB id

6YSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUCCGGCC

Length

9 nucleotides

Bulged bases

6YSR|1|a|C|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YSR_095 not in the Motif Atlas

Geometric match to HL_9E6Q_025

Geometric discrepancy: 0.3708

The information below is about HL_9E6Q_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

6YSR|1|a|G|1133
6YSR|1|a|G|1134
6YSR|1|a|U|1135
6YSR|1|a|C|1136
6YSR|1|a|C|1137
6YSR|1|a|G|1138
6YSR|1|a|G|1139
6YSR|1|a|C|1140
6YSR|1|a|C|1141

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S9