HL_6YST_011

3D structure

PDB id

6YST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

6YST|1|A|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YST_011 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1089

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6YST|1|A|A|382
6YST|1|A|C|383
6YST|1|A|A|384
6YST|1|A|C|385
6YST|1|A|G|386
6YST|1|A|U|387
6YST|1|A|G|388
6YST|1|A|G|389
6YST|1|A|U|390
6YST|1|A|A|391
6YST|1|A|U|392

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L28

Chain w

Transfer RNA; tRNA