3D structure

PDB id
6YST (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUUAGG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6YST_015 not in the Motif Atlas
Geometric match to HL_4V88_190
Geometric discrepancy: 0.3663
The information below is about HL_4V88_190
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_91015.1
Basepair signature
cWW-cWH-F
Number of instances in this motif group
4

Unit IDs

6YST|1|A|C|544
6YST|1|A|U|545
6YST|1|A|U|546
6YST|1|A|A|547
6YST|1|A|G|548
6YST|1|A|G|549

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain R
50S ribosomal protein L21

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1049 s