HL_6YSU_011

3D structure

PDB id

6YSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+0 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

6YSU|1|A|G|386, 6YSU|1|A|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YSU_011 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.2027

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6YSU|1|A|A|382
6YSU|1|A|C|383
6YSU|1|A|A|384
6YSU|1|A|C|385
6YSU|1|A|G|386
6YSU|1|A|U|387
6YSU|1|A|G|388
6YSU|1|A|G|389
6YSU|1|A|U|390
6YSU|1|A|A|391
6YSU|1|A|U|392

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L28