HL_6YSU_040

3D structure

PDB id

6YSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+0 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

6YSU|1|A|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YSU_040 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.1604

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6YSU|1|A|A|1630
6YSU|1|A|G|1631
6YSU|1|A|A|1632
6YSU|1|A|G|1633
6YSU|1|A|A|1634
6YSU|1|A|A|1635
6YSU|1|A|U|1636

Current chains

Chain A

23S ribosomal RNA

Nearby chains