HL_6YT9_015

3D structure

PDB id

6YT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

6YT9|1|2|U|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YT9_015 not in the Motif Atlas

Homologous match to HL_5J7L_017

Geometric discrepancy: 0.0825

The information below is about HL_5J7L_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6YT9|1|2|G|783
6YT9|1|2|A|784
6YT9|1|2|U|785
6YT9|1|2|U|786
6YT9|1|2|A|787
6YT9|1|2|G|788
6YT9|1|2|A|789
6YT9|1|2|U|790
6YT9|1|2|A|791
6YT9|1|2|C|792
6YT9|1|2|C|793

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 4

Small subunit ribosomal RNA; SSU rRNA

Chain l

30S ribosomal protein S11