HL_6YTF_007

3D structure

PDB id

6YTF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit head

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YTF_007 not in the Motif Atlas

Homologous match to HL_4LFB_028

Geometric discrepancy: 0.1329

The information below is about HL_4LFB_028

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

6YTF|1|3|A|1262
6YTF|1|3|G|1263
6YTF|1|3|C|1264
6YTF|1|3|G|1265
6YTF|1|3|A|1266
6YTF|1|3|U|1267

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S13

Chain t

30S ribosomal protein S19