HL_6YTF_011

3D structure

PDB id

6YTF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit head

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUUUCGGAU

Length

9 nucleotides

Bulged bases

6YTF|1|3|U|1133

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YTF_011 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.3455

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6YTF|1|3|A|1130
6YTF|1|3|U|1131
6YTF|1|3|U|1132
6YTF|1|3|U|1133
6YTF|1|3|C|1134
6YTF|1|3|G|1135
6YTF|1|3|G|1136
6YTF|1|3|A|1137
6YTF|1|3|U|1138

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain j

30S ribosomal protein S9