HL_6Z1P_018

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGUUGCAAAA

Length

10 nucleotides

Bulged bases

6Z1P|1|Ab|U|622, 6Z1P|1|Ab|A|626

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_018 not in the Motif Atlas

Homologous match to HL_7RQB_023

Geometric discrepancy: 0.1754

The information below is about HL_7RQB_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.6

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

6

Unit IDs

6Z1P|1|Ab|U|619
6Z1P|1|Ab|G|620
6Z1P|1|Ab|U|621
6Z1P|1|Ab|U|622
6Z1P|1|Ab|G|623
6Z1P|1|Ab|C|624
6Z1P|1|Ab|A|625
6Z1P|1|Ab|A|626
6Z1P|1|Ab|A|627
6Z1P|1|Ab|A|628

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain AD

bL32m

Chain Ad

50S ribosomal protein L3

Chain Aw

Ribosomal protein L22/L17e