HL_6Z1P_083

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUUAAGUU

Length

8 nucleotides

Bulged bases

6Z1P|1|Bb|G|1067

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_083 not in the Motif Atlas

Homologous match to HL_5J7L_024

Geometric discrepancy: 0.1456

The information below is about HL_5J7L_024

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6Z1P|1|Bb|A|1062
6Z1P|1|Bb|U|1063
6Z1P|1|Bb|U|1064
6Z1P|1|Bb|A|1065
6Z1P|1|Bb|A|1066
6Z1P|1|Bb|G|1067
6Z1P|1|Bb|U|1068
6Z1P|1|Bb|U|1069

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain BB

mS37